PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G067500.1
Common NameB456_008G067500, LOC105763278
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 359aa    MW: 39625.1 Da    PI: 6.4037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G067500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09190237455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.008G067500.1 190 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 237
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-9184241No hitNo description
SuperFamilySSF474598.9E-17184255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.237186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDVTVLDRQQ ATYPLELCAS SVPLFQSYLG SGPIVDLKRP EAYLGGDGFH EFVYFPVGGG  60
PEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAASMKE EREDMILEKM ESTTGSDSRE  120
SFTKRKAEVV ADHKSKDKRI KGEVEGESEV KTKCSTQVSR NSSKENSKAC EVQKPDYIHV  180
RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVT GKAGMLDEII NYVQSLQRQV  240
EFLSMKIAAL NSRVEFNVEN LPIKEFPAYV ANFPAAAKLP AMPNLTCFQL NPMQKEAVNC  300
MLNETMHPPL TATEGIASAS VSIPEQALSS STITQLQPFS TWNMDPQGLY NVYDMGFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436881.10.0PREDICTED: transcription factor BEE 2-like isoform X1
TrEMBLA0A0D2RAW30.0A0A0D2RAW3_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.22e-68bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]